LOC_Os02g33610

Expression Profile

RGAP LOCUS ID LOC_Os02g33610
RAP-DB ID Os02g0539600
Function metallo-beta-lactamase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 1.008

3) NUCPRED Prediction
localization Non Nuclear
score 0.63

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.3
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category Trihelix

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GRY79
Function assigned as per literature GRY79 is involved in chloroplast development at early seedling stage of rice
Subcellular localization as per literature Chloroplasts (293 N-terminal amino acids of GRY79 were used)
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25903544
Reference of localization https://link.springer.com/article/10.1007%2Fs00299-015-1792-y
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.137
NLS score 0.7
Protein Sequence >LOC_Os02g33610.1 protein
MVALASLSSLSPCGLARRRSASSAASISCCAAPPPPSAKGSQESRTPRRRVRKTEGATKSLEDSVKRKMEQFYEGLDGPPLRVLPIGGLGEIGMNCMLVG
NYDRYILIDAGVMFPDFDEFGVQKIIPDTTFIKKWSHKIEAVIITHGHEDHIGALPWVIPALDSSTPIFASSFTMELIKRRLKEFGIFLSSRLKVFRVRK
RFQAGPFEVEPLRVTHSIPDCCGLVLRCADGIIFHTGDWKIDESPVDGKIFDRQALEELSKEGVTLMMSDSTNVLSPGRSISESVVAGSLLRHISEAKGR
VITTQFASNIHRIGSIKAAADLTGRKLVFVGMSLRTYLDAAFRDGKSPIDPSTLVHLIESRFLLKVKVEDMDAYAPNDLLVVTTGSQAEPRAALNLASFG
GSHALKLSKEDVLLYSAKVIPGNESRVMKMLNRLTELGPKIVMGKDAGLHTSGHAYHDELEEVLQIVKPQHFLPVHGELLFLKEHELLGRSTGIRHTTVI
KNGEMLGVSHLRNRRVLSNGFVALGKEDLRLMYSDGDKAFGTSTDLCIDERLRIASDGVIFVSMEIFRPQKELASSQSGLKGKFKITTRCLWLDNGRLLD
ALYKAAYAALSSCPVNCPLSHMERMVSEILRKMVRKYSGKRPDVIAVATENTTVSFVEDSETKSSGKFGSFSAPRHSSRSSGRSLEESDKSCPENTEGEA
KENLPDVLRTTRDDATTSSNGEAFFSSDLHKPKTLEHFWDSFKSPTAVKIARIVNGSAQGSKSKIGKISIVGKDSSDPSSAPVKSSKKNKWKPEEIKSLI
QMRGEMNEQFQTVKGRMVLWEEISSSMLSQGISRTPAQCKSLWTSLVQKYEESKKDEESVKTWPYFLDMDRVLSSQGEMATQ

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term hydrolase activity
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Biological Process
GO Term reproduction
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Biological Process
GO Term embryo development
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES