LOC_Os02g33500

Expression Profile

RGAP LOCUS ID LOC_Os02g33500
RAP-DB ID Os02g0538000
Function threonyl-tRNA synthetase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Cytoplasmic
score 1.738

3) NUCPRED Prediction
localization Non Nuclear
score 0.54

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.75
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LAS
Function assigned as per literature LAS is essential for the chloroplast biogenesis and chloroplast ribosomal system construction
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Rice shoot protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28405745
Reference of localization https://link.springer.com/article/10.1007%2Fs00299-017-2136-x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.136
NLS score -0.22
Protein Sequence >LOC_Os02g33500.1 protein
MAAAVSAPLLRFHHHHRCLLRHSSSPRRYPAGFSRGLSSVSFGLPRSTTTAARSTASPSAPSAAAAEATDAASAQAGSDGKGDGIGEEERVVLPTNESSD
RLLRIRHTCAHVMAMAVQKLFPNSKVTIGPWIDNGFYYDFDMEPLTDKDLKRIKKEMDRIIRKNLPLVREEVSREEAQKRIEALNEPYKLEILEGIKEDP
ITIYHIGEEWWDLCAGPHVESTGKIDRRAVELESVAGAYWRGDESNQMLQRIYGTAWETEDQLKAYIHFKEEAKRRDHRRLGLDLDLFSIQEDAGGGLVF
WHPKGAIIRHVLEDSWKQIHLQRGYDLLYTPHVAKAELWKVSGHIDFYKENMYNQMDVEDELYQLRPMNCPYHILVYKRKLHSYRDFPIRVAELGTVYRY
ELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEQILGQFGFRYYEINLSTRPEKSVGSDDIWEKATLALKDALEDKGWEYKVDEGGGAFYGP
KIDLKIEDALGRKWQCSTVQVDFNLPERFDITYVNSNSEKKRPIMIHRAILGSLERFFGVLIEHYAGDFPLWLAPIQARILPVTDNELQYCNEVASELKS
KGIRAEVCHGERLPKLIRNAETKKVPLMAVVGPKEVQARTLTIRSRHSGEIGTMPVDEFFRRIQLAIANKSSSL

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Cellular comBiological Processonent
GO Term mitochondrion
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term translation
7
GO Category Biological Process
GO Term reproduction
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term embryo development
10
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No