LOC_Os02g33430

Expression Profile

RGAP LOCUS ID LOC_Os02g33430
RAP-DB ID Os02g0537500
Function E2F family transcription factor protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Nuclear
score 3.013

3) NUCPRED Prediction
localization Non Nuclear
score 0.66

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.55
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category E2F/DP

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsE2F1
Function assigned as per literature OsE2F1 is required for meristematic tissue-specific expression of rice promoters
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Suspension-cultured tobacco cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 12060226
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1046/j.1365-313x.2002.01196.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.097
NLS score -0.04
Protein Sequence >LOC_Os02g33430.1 protein
MAGSGRPPAAQKKILQSLRPPLPFAASSRSPFAAPNDYHRFPAGGAAAAAASGSGGIGAGGAGGGGDIEEGLVIRTPQKRKAPEESDVAESSDCMITSPG
FAVSPMLTPVSGKAVKTSKSKTKNNKAGPQTPTSNVGSPLNPPTPVGTCRYDSSLGLLTKKFINLLKQAPDGILDLNNAAETLEVQKRRIYDITNVLEGI
GLIEKTLKNRIRWKGLDDSGVELDNGLSALQAEVENLSLKEQALDERISDMREKLRGLTEDENNQRWLYVTEDDIKGLPCFQNETLIAIKAPHGTTLEVP
DPDEAGDYLQRRYRIVLRSTMGPIDVYLVSQFDEKFEDLGGGATPSGHANVPKHQPTEVFNTTNAGVGQCSNSVAVDNNIQHSQTIPQDPSASHDFGGMT
RIIPSDIDTDADYWLISEGDVSITDMWKTAPDVQWDESLDTDVFLSEDVRTPSSHNQQPSAVGGPQMQVSDMHKP

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
6
GO Category Biological Process
GO Term cell cycle
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES