| RGAP LOCUS ID |
LOC_Os02g32350 |
| RAP-DB ID |
Os02g0523500 |
| Function |
TUDOR protein with multiple SNc domains, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
5 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.757 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.3 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
7 |
| confidence value |
0.15 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsTudor-SN |
| Function assigned as per literature |
OsTudor-SN is a component of the RNA transport particle, and may control storage protein biosynthesis |
| Subcellular localization as per literature |
cytoplasm |
| Cells used for localization experiment |
transgenic rice plants |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
18410482 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2008.03516.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
1 |
| Basic residues % |
0.132 |
| NLS score |
0.02 |
| Protein Sequence |
>LOC_Os02g32350.1 protein
MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLSYLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGD
KNVAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRDLPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVR
VYLLPSFQFVQIYVAGVQSPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFGIEAKHFTETRVLNRDVRIVVEGTD
SFSNIIGSVYYSDGDTLKDLALELVENGLAKYVEWSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGDCIIVADDA
APYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQVTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIP
SSGNQPGINIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDLTTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRF
KLTIPKETCSIAFSFSGVRCPGKDEPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSSFGLDRIPDANVLMRAEQS
AKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVLGGGKFYVQTVGDHRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAMIV
NGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKVPNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQG
TGTILIVTLVDAETETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDEEEQAPAARRTGGRR |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
RNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
endoplasmic reticulum |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nuclear envelope |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
nucleic acid binding |
|
| 7 |
| GO Category |
Molecular Function |
| GO Term |
nuclease activity |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cell wall |
|
| 12 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 13 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 14 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
