LOC_Os02g22130

Expression Profile

RGAP LOCUS ID LOC_Os02g22130
RAP-DB ID Os02g0327000
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5

2) CELLO Prediction
localization Cytoplasmic
score 2.176

3) NUCPRED Prediction
localization Non Nuclear
score 0.04

4) Y-Loc Prediction
localization Mitochondrion
score
confidence value 0.07
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGAP1
Function assigned as per literature OsGAP1 acts as a positive regulator early in the intracellular trafficking of OsRab11 protein
Subcellular localization as per literature Trans-Golgi network (TGN) or pre-vacuolar compartment (PVC)
Cells used for localization experiment Arabidopsis protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 16230331
Reference of localization https://academic.oup.com/pcp/article/46/12/2005/1827406
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.152
NLS score -0.47
Protein Sequence >LOC_Os02g22130.1 protein
MLGHLVGLVKVRVVRGVNLAVRDLRSSDPYVIVRMGKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRLEVYDKDTFIDDAMGNAELDIRPLVEVVKMK
IEGVADNTVVKKVVPNRQNCLAEESTIYISEGKVKQDVVLRLRDVECGEIELQLQWVDIPGSKGV

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No