LOC_Os02g22020

Expression Profile

RGAP LOCUS ID LOC_Os02g22020
RAP-DB ID Os02g0325600
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.685

3) NUCPRED Prediction
localization Nuclear
score 0.85

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.99
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category G2-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) NIGT1
Function assigned as per literature nitrate-responsive transcriptional regulation in monocots and dicots
Subcellular localization as per literature Nucleus
Cells used for localization experiment maize protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 23324170
Reference of localization https://academic.oup.com/pcp/article/54/4/506/1829683
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 2
Number of Bipartite 2
Basic residues % 0.121
NLS score 1.62
Protein Sequence >LOC_Os02g22020.1 protein
MEVDHADRDGARRRCREYLLALEEERRKIQVFQRELPLCFDLVTQTIEGMRSQMDAAGSEETVSDQGPPPVLEEFIPLKPSLSLSSSEEESTHADAAKSG
KKEEAETSERHSSPPPPPPEAKKVTPDWLQSVQLWSQEEPQQPSSPSPTPTKDLPCKPVALNARKAGGAFQPFEKEKRAELPASSTTAAASSTVVGDSGD
KPTDDDTEKHMETDKDNDKDAKDKDKEGQSQPHRKPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSSTGQS
SAAAGVPAPPAPQFVVVGSIWVPPPEYAAAAAAQQHVQLAAAGNNASGSANPVYAPVAMLPAGLQPHSHRKQHQQQQQGQRHSGSEGRRSGDAGDGSSSS
PAVSSSSQTTSA

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No