LOC_Os02g19130

Expression Profile

RGAP LOCUS ID LOC_Os02g19130
RAP-DB ID Os02g0293300
Function transcription factor X1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 2.224

3) NUCPRED Prediction
localization Nuclear
score 0.89

4) Y-Loc Prediction
localization Nuclear
score 99.96
confidence value 0.98
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFDML1
Function assigned as per literature OsFDML1 is targeted by OsMADS6 which controls flower development
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Rice protoplasts cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29717020
Reference of localization http://www.plantphysiol.org/content/plantphysiol/early/2018/05/01/pp.18.00017.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.156
NLS score 0.83
Protein Sequence >LOC_Os02g19130.1 protein
MDFTSDESELSDADIDDYADKCYMDLKSGKPVVSLGNEKFRCPFCLGKKKQDYRYNELLQHAIGVGASNRAPKVKANHMALANLLKNDYADAAGSLPSRQ
AIGPSNPPRPLQDQEAYVWPWMGILANVPAEKTKEDGASLMQQLANFNPLQFTAVLCSEGRYTGYAVVGFSKDWIGFTNALAFHNYFKSQRLGKKDWAAL
GQEKYICGWMAKEEDYKSSDPVGRFLSANGDLKTVSGLENDLSRKTETLIANLSHQITAKSKYLVELECRCNQMNLSVKRAMEETDLLHKSYNEEMRNMQ
SAAREHSQKIFEETDQLRKQLDDKENAIERRSKQLSKFVAQTDIERRKLESEMKKNSEQNDSIHMARIEQQKSDKNVLKLVEKHKKEKEIALNKILQLEK
QLDEKQKLELEIQQLRGRLLVVQHMEGEGVDVKKRTDELTEELNEKIEEMEYMEGLNQTLIIKERKTNDELQDAKKALISGLSELLGPRSTIGLKRMGEL
DEKPFLAACKKRYGTADGEAEIKAAEFCSEWQENLKDANWHPFKIVTRGGKTEQIINEDDEKLVGLKEQLGDEVYKAVTTALLEINEYNASGSYVVSELW
NNKEDRKASMQEALQHVLEQWKLRRRRR

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No