LOC_Os02g17780

Expression Profile

RGAP LOCUS ID LOC_Os02g17780
RAP-DB ID Os02g0278700
Function ent-kaurene synthase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Cytoplasmic
score 1.298

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.59
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCPS|OsCPS1
Function assigned as per literature OsCPS1 is involved in GA biosynthesis
Subcellular localization as per literature Plastid (N-terminal transit peptide-like sequence was used)
Cells used for localization experiment Rice mesophyll cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25336684
Reference of localization https://academic.oup.com/jxb/article/66/1/369/2893437
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.105
NLS score 0.15
Protein Sequence >LOC_Os02g17780.1 protein
MIHLHSPPTAPAAFGGAGSADWRRRRRWSWSSSSRAPVAKGGHLRPCVWRRGGDDGGGEDHHADGGGGGGGGAAWRARATTAGVSSSSSTAKGLQANIIE
HETPRITKWPNESRDLDDHQQNNEADEEADDELQPLVEQVRSMLSSMEDGAITASAYDTAWVALVPRLDGEGGTQFPAAVRWIVGSQLADGSWGDEALFS
AYDRVINTLACVVALTRWSLHHDQCKQGLQFLNLNLWRLAEEEPDTMPIGFEIAFPSLVEAARGLGIDFPYDHPALKGIYANRELKLKRIPKDMMHIVPT
SILHSLEGMPGLDWQRLLKLQCSDGSFLFSPSATAYALMQTGDKKCFAYIDRIIKKFDGGVPNVYPVDLFEHIWVVDRLERLGISRYFQREIEQNMDYVN
RHWTEDGICWARNSNVKEVDDTAMAFRLLRLHGYNVSPSVFKNFEKDGEFFCFVGQSTQAVTGMYNLNRASQISFPGEDILQRARNFSYEFLREREAQGT
LHDKWIISKDLPGEVQYTLDFPWYASLPRVEARTYIGQYGGNDDVWIGKTLYRMPIVNNATYLELAKQDFNRCQALHQHELQGLQKWFIENGLEAFGMTP
EDVLRAYFLAAACIFEPNRASERLAWARVSVLANTISRHFYSDMSSMKRMERFMWSSLYEENGNVLGLEGYAKDGILARTLCQLIDLLSQETPPVREGQK
CIHNLIRCAWIEWMMQQINMKDGRYDKGRVMHPGSCTVHNKETCLLIAQIVEICAGRIEEAASMINNTEGSWFIQLASSICDSLHAKMLLSQDTKKNETT
INQIDKEIELGMQELAQYLLPRVDDRRINNKTKQTFLSIVKSCYYAANCSPHMLDQHISEVIFEQVI

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Biological Process
GO Term signal transduction
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term lipid metabolic process
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No