LOC_Os02g17390

Expression Profile

RGAP LOCUS ID LOC_Os02g17390
RAP-DB ID Os02g0274100
Function 3-hydroxyacyl-CoA dehydrogenase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 6

2) CELLO Prediction
localization Cytoplasmic
score 1.666

3) NUCPRED Prediction
localization Non Nuclear
score 0.06

4) Y-Loc Prediction
localization Cytoplasm
score 51
confidence value 0.47
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) MFP|AIM1
Function assigned as per literature AIM1 plays a role in root meristem activity maintenance and root growth in rice
Subcellular localization as per literature Peroxisome
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28298519
Reference of localization http://www.plantcell.org/content/29/3/560.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.117
NLS score 0.21
Protein Sequence >LOC_Os02g17390.1 protein
MAGAIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFCGGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKK
PSVAAIQGLALGGGLELTMGCHARISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDALCSPDELIKMSRLWALE
IANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLPQHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVT
DVQLKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRGSLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKI
PLKQSIFSDLEKVCPPHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKVPVVVGNCTGFAVNRTFF
PYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGVALAVKDIYAAAFGTRNLDSNLVDLMVQNGRQGKSNGKGYYLYEKGGKPKPDPSVQVV
IDEYRRCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSY
LEDRAKRSLPLSAPNATQQASSRSRM

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term post-embryonic development
4
GO Category Cellular comBiological Processonent
GO Term peroxisome
5
GO Category Biological Process
GO Term flower development
6
GO Category Biological Process
GO Term catabolic process
7
GO Category Biological Process
GO Term cellular process
8
GO Category Biological Process
GO Term lipid metabolic process
9
GO Category Cellular comBiological Processonent
GO Term cell wall
10
GO Category Biological Process
GO Term multicellular organismal development
11
GO Category Biological Process
GO Term biosynthetic process
12
GO Category Molecular Function
GO Term catalytic activity
13
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No