LOC_Os02g15350

Expression Profile

RGAP LOCUS ID LOC_Os02g15350
RAP-DB ID Os02g0252400
Function dof zinc finger domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization mito
score 6

2) CELLO Prediction
localization Nuclear
score 2.711

3) NUCPRED Prediction
localization Non Nuclear
score 0.24

4) Y-Loc Prediction
localization Nuclear
score 77.96
confidence value 0.02
Number Of Software Predicting Nucleus 2
Seed Specific Yes
Transcription factor category C2C2-Dof

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) RPBF|OsDof3
Function assigned as per literature RPBF play a role during grain filling
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 19473328
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/j.1365-313X.2009.03925.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.062
NLS score -0.47
Protein Sequence >LOC_Os02g15350.1 protein
MASGGALSPVEEKPTVVKTTKAEQHEEEAAVAVKSAAEMMKKSSPCCPRCNSIKTKFCYYNNYSMAQPRYFCRECRRYWTQGGSLRNVPVGGGCRKSKRS
SASSASASAASPPAPAVGAAPPVVPALSSAISKLLQSEPMAAPCADFPNVLPTFVSTGFELPAAAGDRLSLGSFGAFGNLSAAVAAPGGGGGSSTTTSFM
DMLRGVGGLFDGVGNSHQMGGNGGGGGSYYAPLITGAGNGMLMPPPPLPPFSGSLMQHGMQGLFANHAMGGGGGGVMNAGEDGSVMAGLGGGQWPPALGG
ADEQQGGGDGGEAVMTKDTGGGASSSASRPDYFYGWNSAAGGVVAGGGIGGNAAAATGATPWQGLIDSSSAMM

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
5
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants No