LOC_Os02g14720

Expression Profile

RGAP LOCUS ID LOC_Os02g14720
RAP-DB ID Os02g0244100
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13.5

2) CELLO Prediction
localization Nuclear
score 3.153

3) NUCPRED Prediction
localization Nuclear
score 0.81

4) Y-Loc Prediction
localization Nuclear
score 98.31
confidence value 0.74
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GW2
Function assigned as per literature GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29958473
Reference of localization https://www.mdpi.com/1422-0067/19/7/1904/htm
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.47
Protein Sequence >LOC_Os02g14720.1 protein
MGNRIGGRRKAGVEERYTRPQGLYEHRDIDQKKLRKLILEAKLAPCYMGADDAAAAADLEECPICFLYYPSLNRSKCCSKGICTECFLQMKPTHTAQPTQ
CPFCKTPSYAVEYRGVKTKEERSIEQFEEQKVIEAQMRMRQQALQDEEDKMKRKQNRCSSSRTITPTKEVEYRDICSTSFSVPSYRCAEQETECCSSEPS
CSAQTSMRPFHSRHNRDDNIDMNIEDMMVMEAIWRSIQEQGSIGNPVCGNFMPVTEPSPRERQPFVPAASLEIPHGGGFSCAVAAMAEHQPPSMDFSYMA
GSSAFPVFDMFRRPCNIAGGSMCNLESSPESWSGIAPSCSREVVREEGECSADHWSEGAEAGTSYAGSDIVADAGTMPQLPFAENFAMAPSHFRPESIEE
QMMFSMALSLADGHGRTHSQGLAWL

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term protein modification process
3
GO Category Molecular Function
GO Term binding
Presence of Splice variants YES