LOC_Os02g13950

Expression Profile

RGAP LOCUS ID LOC_Os02g13950
RAP-DB ID Os02g0234200
Function NHL repeat-containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 10

2) CELLO Prediction
localization Nuclear
score 1.355

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.52
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) FUWA
Function assigned as per literature FUWA plays a role in determining panicle architecture, grain shape and grain weight in rice
Subcellular localization as per literature Golgi body
Cells used for localization experiment Rice leaf protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26043067
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12895
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.118
NLS score -0.47
Protein Sequence >LOC_Os02g13950.1 protein
MASLLLLLLLVLSLAAVHTDAAAFPSPADSIVRQLSSVVKWPRVPSSSSSSSHGHKQPSHPQYDGGVALQFESGYFVETLVEGDKLGVTPHTIRVSPVEG
GELLAVDSAHSNIVRITPPLSEYSRGRLVAGSFQGHSGHIDGKPSDARFKRPTGVAVDDTGNVYVADTANLAIRKIGESGVTTIAGGKSNIPGYRDGPSE
DAKFSTDFDVVYVKKMCSLLVIDRGNAALRKIALPQEDCTYQDATLLSSDIILVIGAVVAGYIFSVVQHGFGSSTAEKIEAPEDEHQESSTVGKPPLVVE
SLKEEPSAGWPSLGTLIGDLLKLVIEGVGNQLLRLVPSRLQHGKRKTDLTPLKDRLVMPEDTEETPVAQKLSSTPMRPETLHGPNPVNETAPKAQKSVKS
SKFRDSTLSSKHRSSKRQEYAEFYGSSETPQVSSKVPKDRLRHRHREKSGEAVYGTSHPEPKPAEVKPADYSDPKYDPYNIRSKYGADSGYRY

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No