LOC_Os02g13370

Expression Profile

RGAP LOCUS ID LOC_Os02g13370
RAP-DB ID Os02g0227100
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 3.341

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Nuclear
score 95.28
confidence value 0.9
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsO3L3
Function assigned as per literature OsO3L3 is histone H2A interacting nuclear proteins in vascular cells and especially in the root tip region and interaction with histone H2A modifies chromatin to regulate downstream gene expression
Subcellular localization as per literature OsO3L3 is colocalized with H2A in Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 29684657
Reference of localization https://www.sciencedirect.com/science/article/pii/S1871678417305198?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.47
Protein Sequence >LOC_Os02g13370.1 protein
MHMGKRGELNLDTCLCLPKSGVQKYTGDKQPFAPGRMREACAPVPPGAHEEACIEQSDDRSEDGSFSGSSIGSSCSSASDLSDDGSSYRPGDYLEPSSSS
SSASSSTLQLDSEGPLCDLSSLIAQLPIRRGLSNYYQGKSQSFTSISDATCVQDLAKKITYNKRMKACKSYAAGLDMNQRSNHLPKPCNKMIAKRPSKGS
FTCLLSRPSSTSLLCSSAKPPTHQSKKDVQMHINS

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Biological Process
GO Term biological_process
4
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
Presence of Splice variants No