| RGAP LOCUS ID |
LOC_Os02g12790 |
| RAP-DB ID |
Os02g0220400 |
| Function |
GATA zinc finger domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
8 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.683 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.73 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
98 |
| confidence value |
0.93 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
C2C2-GATA |
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
Cga1 |
| Function assigned as per literature |
|
| Subcellular localization as per literature |
NA |
| Cells used for localization experiment |
|
| NUCLEAR or Not Nuclear |
|
| PMID |
|
| Reference of localization |
|
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
3 |
| Number of PAT7 |
3 |
| Number of Bipartite |
2 |
| Basic residues % |
0.116 |
| NLS score |
2.55 |
| Protein Sequence |
>LOC_Os02g12790.1 protein
MSTIYMSQLPATLPLMEGDQDQGLYPAFHRAKDPPILFPFMIDSAVEHQGQIYGDQGLRRQQVLGESNQQFNDHMMMGGSDVFLTPSPFRPTIQSIGSDM
IQRSSYDPYDIESNNKQHANGSTSKWMSTPPMKMRIIRKGAATDPEGGAVRKPRRRAQAHQDESQQQLQQALGVVRVCSDCNTTKTPLWRSGPCGPKSLC
NACGIRQRKARRAMAAAANGGAAVAPAKSVAAAPVNNKPAAKKEKRAADVDRSLPFKKRCKMVDHVAAAVAATKPTAAGEVVAAAPKDQDHVIVVGGENA
AATSMPAQNPISKAAATAAAAAASPAFFHGLPRDEITDAAMLLMTLSCGLVHS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
cellular homeostasis |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biological_process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
flower development |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 10 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 11 |
| GO Category |
Molecular Function |
| GO Term |
sequence-specific DNA binding transcription factor activity |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| Presence of Splice variants |
No |
