LOC_Os02g12440

Expression Profile

RGAP LOCUS ID LOC_Os02g12440
RAP-DB ID Os02g0215900
Function receptor kinase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 4.5

2) CELLO Prediction
localization PlasmaMembrane
score 1.171

3) NUCPRED Prediction
localization Non Nuclear
score 0.26

4) Y-Loc Prediction
localization Nuclear
score 42.57
confidence value 0.09
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGIRL1
Function assigned as per literature OsGIRL1 acts as receptors of external signals
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 25173451
Reference of localization https://www.sciencedirect.com/science/article/pii/S0176161714002144?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.076
NLS score -0.47
Protein Sequence >LOC_Os02g12440.1 protein
MLSVVNFDGNQLEATNDADWGFMTSLTNCSNMILIDVSINKLQGVLPKAIGNMSTQLEYFGITNNNITGTIPESIGNLVNLDELDMENNLLMGSLPASLG
NLKKLNRLSLSNNNFSGSIPVTLGNLTKLTILLLSTNALSGAIPSTLSNCPLEMVDLSYNNLSGPIPKELFLISTISSFLYLAHNKLTGNLPSEVGNLKN
LDELDLSDNTISGKIPTTIGECQSLQYLNLSRNFIEDTIPPSLEQLRGLLVLDLSQNNLSGTIPRFLGSMTGLSTLNLSSNDFEGEVPKYGIFLNATATS
VMGNNDLCGGAPQLKLPKCSNQTKHGLSSKIIIIIIAGSTILFLILFTCFALRLRTKLRRANPKIPLSDKQHMRVSYAQLSKATNSFASENLIGVGSFGA
VYQGRIGISDQQLVVAVKVLNLQQAGAYRSFDAECEALRCIRHRNLVKILTVCSGIDFQGSDFKALVFEFLPNGNLDQWLHKHLEEEGEPKVLNLVERLQ
IAIDVASALEYLHQHKPCPIVHCDLKPSNILLDNDMVAHVGDFGLARFLHQEHSNSSDKSTGWNAIRGTIGYVAPEYGLGNEVSIHGDVYSYGILLLEMF
TGKRPTNSEFGDVLTLHEYVETALPDQTTSVIDQSLLDATWNSEGTAQKYHDIEEIRTECIVSILKVGILCSKEIPTDRMQIGDALRELQAIRDRFDTHQ
L

GO Analysis
1
GO Category Biological Process
GO Term signal transduction
2
GO Category Molecular Function
GO Term kinase activity
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No