| RGAP LOCUS ID |
LOC_Os02g10480 |
| RAP-DB ID |
Os02g0198300 |
| Function |
stromal membrane-associated protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
7.5 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.036 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.11 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
56.35 |
| confidence value |
0.12 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsAGAP |
| Function assigned as per literature |
OsAGAP has a specific role in regulating vesicle trafficking pathways such as the auxin influx pathway, which in turn controls auxin-dependent root growth in plants |
| Subcellular localization as per literature |
Plasma membrane, cytoplasm and nucleus |
| Cells used for localization experiment |
Onion epidermal cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
17059407 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-313X.2006.02898.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.103 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os02g10480.6 protein
MSGRRDDSAKMAKLKELLHRSENRICADCSAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSVTLDQWSDNEIDNVIEVGGNSHANAIYETFLPQNH
SKPHPDSTQEEREKFIRSKYELQEFLEPSLRIVSHQSSDSGKHAGSASHSVSSKSEVGMIEFIGILNVKVKGGTNLAIRDMSSSDPYVVLTLGQQKAQTS
VIKANLNPVWNEELKLSVPQQYGPLKLQVFDHDMLSKDDLMGEAEIDLQPMINAAAAFGDPGLLGDRQIGRWLKSGDNALVRDSAVVVAGGEVRQELALK
LQFTESGEVELEMQWFPLNM |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Molecular Function |
| GO Term |
enzyme regulator activity |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
Golgi apparatus |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
catabolic process |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
lipid binding |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
vacuole |
|
| Presence of Splice variants |
YES |
