LOC_Os02g10290

Expression Profile

RGAP LOCUS ID LOC_Os02g10290
RAP-DB ID Os02g0196600
Function copper-transporting ATPase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 12

2) CELLO Prediction
localization PlasmaMembrane
score 1.344

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Cytoplasm
score 80
confidence value 0.69
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHMA4
Function assigned as per literature OsHMA4 may facilitate the development of rice varieties with grain Cu concentrations tuned to both the concentration of Cu in the soil and dietary needs
Subcellular localization as per literature Tonoplast
Cells used for localization experiment stable A. thaliana transgenic plants
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27387148
Reference of localization https://www.nature.com/articles/ncomms12138.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.094
NLS score -0.04
Protein Sequence >LOC_Os02g10290.1 protein
MEQNGENHLKDPLLQADGGGSGASPAGASPRKERKTRKVMFNVRGISCASCAVSIETVVAGLKGVESVSVSPLQGQAVVQYRPEEADARTIKEAIEGLNF
EVDELQEQEIAVCRLQIKGMACTSCSESVERALQMVPGVKKAAVGLALEEAKVHFDPNITSRDLIIEAIEDAGFGADLISSGDDVNKVHLKLEGVSSPED
IKLIQSRLESVEGVNNVECDTAGQTIIVAYDPDVTGPRLLIQCIQDAAQPPKYFNASLYSPPKQREAERHHEIRNYRNQFLWSCLFSVPVFMFSMVLPMI
SPFGDWLFYKVCNNMTIGMLLRWLLCSPVQFIIGWRFYVGAYHALKRGYSNMDVLVALGTNAAYFYSVYIVLKALTSESFEGQDFFETSAMLISFILLGK
YLEVVAKGKTSDALSKLTELAPETACLLTLDKDGNAISETEISTQLLQRNDVIKIVPGEKVPVDGVVIKGQSHVNESMITGEARPIAKKPGDKVIGGTVN
DNGCIIVKVTHVGSETALSQIVQLVEAAQLARAPVQKLADRISRFFVPTVVVAAFLTWLGWFVAGQFDIYPREWIPKAMDSFELALQFGISVLVVACPCA
LGLATPTAVMVATGKGASQGVLIKGGNALEKAHKVKAIIFDKTGTLTVGKPSVVQTKVFSKIPLLELCDLAAGAEANSEHPLSKAIVEYTKKLREQYGSH
SDHIMESKDFEVHPGAGVSANVEGKLVLVGNKRLMQEFEVPISSEVEGHMSETEELARTCVLVAIDRTICGALSVSDPLKPEAGRAISYLSSMGISSIMV
TGDNWATAKSIAKEVGIGTVFAEIDPVGKAEKIKDLQMKGLTVAMVGDGINDSPALAAADVGLAIGAGTDVAIEAADIVLMRSSLEDVITAIDLSRKTLS
RIRLNYVWALGYNVLGMPVAAGVLFPFTGIRLPPWLAGACMAASSVSVVCSSLLLQLYKKPLHVEEVAAGPKNDPDLV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Molecular Function
GO Term hydrolase activity
3
GO Category Molecular Function
GO Term transporter activity
4
GO Category Biological Process
GO Term transport
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term catabolic process
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No