LOC_Os02g08500

Expression Profile

RGAP LOCUS ID LOC_Os02g08500
RAP-DB ID Os02g0182100
Function two-component response regulator, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12.5

2) CELLO Prediction
localization Nuclear
score 4.181

3) NUCPRED Prediction
localization Non Nuclear
score 0.61

4) Y-Loc Prediction
localization Nuclear
score 99.9
confidence value 0.87
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category ARR-B

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LEPTO1|OsRR24|DLC1
Function assigned as per literature LEPTO1 plays role in organization of leptotene chromosomes in rice meiosis
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30538156
Reference of localization http://www.plantcell.org/content/early/2018/12/11/tpc.18.00479.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.093
NLS score -0.22
Protein Sequence >LOC_Os02g08500.1 protein
MTVEERQGRVGGHGVSGGGGGRDQFPVGMRVLAVDDDPTCLKILENLLLRCQYHVTTTGQAATALKLLRENKDQFDLVISDVHMPDMDGFKLLELVGLEM
DLPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQLRTIWQHVIRRKNCDAKNRGNDDDAGQKAQGMNNEGESIGANRNKRQSRKSRDENGDDGDDSDE
NSNENGDSSTQKKPRVVWSVELHRKFVAAVNQLGIEKAVPKKILDLMNVENITRENVASHLQKYRLYLKRLSTDASRQANLAAAFGGRNPAYINMNSFGN
YNAYGRYRTVPTAGHTQANNILTRMNSPSAFGVHGLLHSQPIQLGHAQNNLSTSLNDLGGLNNGNMIRGAQMSTILTGPSGNSFPNISNGAPLATANRSL
QPLESSNQQHLSRVHSSSADPFSTLVGESPQFPDLGRTTNTWQTAVPSNIQDRGHNDNMSQATLHMNGPKIEPVSSFTSSNQIPLLGNEMQGQVASLASN
VPIAFNQDTSPFNYGSSTNSRDMLNNSHVFSNSSINTSLPNLSLDNPAVPRQTLDRGNTGIVSPMQDGRIHHQAVSNQLNYNDDLMRTTGLQRGLSGGLD
DIVVDMFRPDREDDGVPYIDGDWELV

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term secondary metabolic process
7
GO Category Biological Process
GO Term signal transduction
8
GO Category Biological Process
GO Term response to endogenous stimulus
9
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
10
GO Category Molecular Function
GO Term signal transducer activity
Presence of Splice variants No