LOC_Os02g07430

Expression Profile

RGAP LOCUS ID LOC_Os02g07430
RAP-DB ID Os02g0170300
Function OsMADS29 - MADS-box family gene with MIKCc type-box, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10

2) CELLO Prediction
localization Nuclear
score 3.739

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 0.98
Number Of Software Predicting Nucleus 3
Seed Specific Yes
Transcription factor category MIKC_MADS

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMADS29
Function assigned as per literature MADS29 affects embryo development and grain filling by maintaining hormone homeostasis and degradation of cells in the nucellus and nucellar projection
Subcellular localization as per literature Nuclear when present as dimer or in interaction with other MADS BOX proteins
Cells used for localization experiment Onion epidermal cell
NUCLEAR or Not Nuclear NUCLEAR
PMID 25096923
Reference of localization https://academic.oup.com/jxb/article/65/18/5339/2885030
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 2
Basic residues % 0.108
NLS score 0.51
Protein Sequence >LOC_Os02g07430.1 protein
MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEINHDQQIFVEMTRMRNEME
KLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENHHQAAVGGGDVKAMVEMAPVLSMLTAAP
AYYGEESSSTALQLTPPLHAVDAAAAAGFRLQPTQPNLQDPGCSSSSFHAAAAGHGLQLW

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term anatomical structure morphogenesis
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Biological Process
GO Term cellular process
7
GO Category Biological Process
GO Term reproduction
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term secondary metabolic process
10
GO Category Biological Process
GO Term flower development
11
GO Category Molecular Function
GO Term protein binding
12
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No