LOC_Os02g07120

Expression Profile

RGAP LOCUS ID LOC_Os02g07120
RAP-DB ID Os02g0167700
Function HEAT repeat family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 4

2) CELLO Prediction
localization Nuclear
score 1.47

3) NUCPRED Prediction
localization Non Nuclear
score 0.57

4) Y-Loc Prediction
localization Cytoplasm
score 64
confidence value 0.46
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCAND1
Function assigned as per literature OsCAND1 is involved in auxin signaling to maintain the G2/M cell cycle transition in crown root meristem
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 20978084
Reference of localization https://www.cell.com/molecular-plant/fulltext/S1674-2052(14)60619-5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.115
NLS score -0.47
Protein Sequence >LOC_Os02g07120.1 protein
MANMNITTILEKMTGKDKDYRYMATSDLLSELNKEGFKADQDIEPKLTTTVLQQLEDASGDVSGLAVKCLAPLVKKVGEDRVVEMTNILCDKLLNGKDQH
RDTASIALKTIIVEVTTTSLAEKILVSLAPQLIKGATAGKSAEVKCECLDILGDVLHRFGNLITKDHDSMLTALLSQLSSNQASVRKKSISCIASLAACL
SDDLLAKATFEVVQLLKNRSAKSEIARTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELREYSLQALESFMLRCPRDISPYCEGILNLAL
EYISYDPNFTDSMEEDTDDEAQDEEDDDESANEYTDDEDASWKVRRASAKCLSAIIVSRPEMLSKMYLEACPKLIERFREREENVKMDIFNTFIELLRQT
GNMTKGQGDIDESSPRWLLKQEVPKVVKSINRQLREKSIKTKVGAFSVLKELVVVLPDCLADHIGSLVPGIEKALNDKSSTSNLKIEALVFTRLVMASHS
PAVFHPYIQALSGPILSAIGDRYYKVTAEALRVCGELVRVLRPNFEARTLDYRPYIGPIYKAILARLANQDQDQEVKECAISCMSLVVFTFGDGLQRELP
ACLPILVDRMGNEITRLTAVKAFAVIAKSPLRIDLSCVLDHVISELTAFLRKANRALRQATLGTLNSLVVAYGGQIGSSYETIIAELSTLISDMDLHMTA
LALELCCTIMVDRKSIQNVGLAVRYKVLPQALILIRSALLQGQALQALQRFFASLVQSANTSFDTLLDSLISTAKPSQSGGLAKQALSSIAQCVAVLCLA
AGDQKCASTIEMLKGILKDDSTTNSAKQHMALLCLGEIGRRKDLSNHAQIENIVIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILNQIDNQQKKQY
LLLHSLKEVIARQSVDHTGQSELQDSNIEKILALLFNHCESEEEGVRNVVAECLGKIALIEPRKLIPALKERTSSPAANTRATVAIAIKYSIVERPGKID
EIMYSEISTFLMLIKDSDRHVRRAAVLALSTAAHNKPNLIKGLLPELLPLLYDQTVVKQELIRTVDLGPFKHVVDDGLELRKAAFECVDTLLDSCLDQVN
PSSFIVPFLLSGLGDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPIEKTINHKPKGDAVKQEVDRNEDMIRSALRAIAALSRISGNDYSMRFKNLMN
KIMASPPLADKYNSVRSE

GO Analysis
1
GO Category Biological Process
GO Term multicellular organismal development
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Cellular comBiological Processonent
GO Term cell wall
5
GO Category Cellular comBiological Processonent
GO Term cytosol
6
GO Category Molecular Function
GO Term binding
7
GO Category Cellular comBiological Processonent
GO Term plasma membrane
8
GO Category Biological Process
GO Term reproduction
9
GO Category Biological Process
GO Term post-embryonic development
Presence of Splice variants No