LOC_Os02g05840

Expression Profile

RGAP LOCUS ID LOC_Os02g05840
RAP-DB ID Os02g0152500
Function VIL2 protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 4.515

3) NUCPRED Prediction
localization Non Nuclear
score 0.67

4) Y-Loc Prediction
localization Nuclear
score 72.8
confidence value 0.28
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LC2|OsVIL3
Function assigned as per literature LC2 encodes a vernalization insensitive 3 (VIN3)-like protein, functions as a repressor of cell division to regulate the collar development and hence the leaf angle of rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Transgenic rice plants and onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 20644566
Reference of localization https://www.nature.com/articles/cr2010109
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 1
Basic residues % 0.123
NLS score 0.36
Protein Sequence >LOC_Os02g05840.1 protein
MDPPYAGVPIDPAKCRLMSVDEKRELVRELSKRPESAPDKLQSWSRREIVEILCADLGRERKYTGLSKQRMLEYLFRVVTGKSSGGGVVEHVQEKEPTPE
PNTANHQSPAKRQRKSDNPSRLPIVASSPTTEIPRPASNARFCHNLACRATLNPEDKFCRRCSCCICFKYDDNKDPSLWLFCSSDQPLQKDSCVFSCHLE
CALKDGRTGIMQSGQCKKLDGGYYCTRCRKQNDLLGSWKKQLVIAKDARRLDVLCHRIFLSHKILVSTEKYLVLHEIVDTAMKKLEAEVGPISGVANMGR
GIVSRLAVGAEVQKLCARAIETMESLFCGSPSNLQFQRSRMIPSNFVKFEAITQTSVTVVLDLGPILAQDVTCFNVWHRVAATGSFSSSPTGIILAPLKT
LVVTQLVPATSYIFKVVAFSNYKEFGSWEAKMKTSCQKEVDLKGLMPGGSGLDQNNGSPKANSGGQSDPSSEGVDSNNNTAVYADLNKSPESDFEYCENP
EILDSDKASHHPNEPTNNSQSMPMVVARVTEVSGLEEAPGLSASALDEEPNSAVQTQLLRESSNSMEQNQRSEVPGSQDASNAPAGNEVVIVPPRYSGSI
PPTAPRYMENGKDISGRSLKAKPGDNILQNGSSKPEREPGNSSNKRTSGKCEEIGHKDGCPEASYEYCVKVVRWLECEGYIETNFRVKFLTWYSLRATPH
DRKIVSVYVNTLIDDPVSLSGQLADTFSEAIYSKRPPSVRSGFCMELWH

GO Analysis
1
GO Category Biological Process
GO Term reproduction
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term post-embryonic development
4
GO Category Cellular comBiological Processonent
GO Term nucleus
5
GO Category Cellular comBiological Processonent
GO Term cellular_component
6
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants No