LOC_Os02g05330
| RGAP LOCUS ID | LOC_Os02g05330 |
| RAP-DB ID | Os02g0146600 |
| Function | DEAD-box ATP-dependent RNA helicase, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | cyto |
| score | 11 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 2.131 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.39 |
4) Y-Loc Prediction |
|
| localization | Nuclear |
| score | 91.91 |
| confidence value | 0.86 |
| Number Of Software Predicting Nucleus | 2 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OseIF4A |
| Function assigned as per literature | eIF4A could facilitate recruitment of DRM2 across plant species during RdDM |
| Subcellular localization as per literature | Nucleus when interacted with OsDRM2 |
| Cells used for localization experiment | Onion epidermal cells |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 23732981 |
| Reference of localization | https://www.sciencedirect.com/science/article/pii/S0022283613003355 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 0 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.118 |
| NLS score | -0.47 |
| Protein Sequence | >LOC_Os02g05330.1 protein MAGMAPEGSQFDAKHYDSKMQELLHQGDNEEFFTSYDEVFESFDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL QQLDYGLVECQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGF KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKM RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYN VTIEELPANVADLL |
GO Analysis |
|
| Presence of Splice variants | No |