LOC_Os02g04840

Expression Profile

RGAP LOCUS ID LOC_Os02g04840
RAP-DB ID Os02g0141300
Function GHMP kinases ATP-binding protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 4.5

2) CELLO Prediction
localization Cytoplasmic
score 1.889

3) NUCPRED Prediction
localization Non Nuclear
score 0.13

4) Y-Loc Prediction
localization Cytoplasm
score 83
confidence value 0.91
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CAP1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.103
NLS score -0.47
Protein Sequence >LOC_Os02g04840.1 protein
MRIRGDGGGDEEEAAMAVVSAPPQHLVFAYYITGHGFGHATRALEVVRHLIAAGHDVHVVTGAPEFVFTTEISSPNLHIRKVLLDCGAVQADALTVDRLA
SLEKYHQTAVMPRESILRTEVEWLNTIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYVVVAGHHHRSIVWQIAEDYSHCEFLLRLPGYCPM
PAFRDVIDVPLVVRRLHKSRSEVRKELGIKDDVKVVIFNFGGQPAGWKLKKEWLPDGWLCLVCGASETQELPPNFIKLAKDAYTPDLMAASDCMLGKIGY
GTVSEALAYKLPFVFVRRDYFNEEPFLRNMLEHYQCGVEMVRRDLLTGHWKPYLQRAMTLHPCYDGPINGGEVAAHILQDTAVGKKYISGKLSGARRLRD
AIVLGYQLQRAPGRDVGIPDWYSVSEKEIGVRPAPTYHEVNGSAESSFEDFEILHGDIQGLTDTMAFLTSLSGLVGNDPRSPEKQSRERVAASVFFDWEE
EIYVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAIQRSNPMKQKLWKHTQARQLANGRAVPLLQIVSFGSELSNRAPTFDMDLSDFMDGDKPISYDK
AKEYFSQDPSQKWAAYVAGTILVLMTELGVVFTDSMSILVSSSVPEGKGVSSSASVEVASMSAIAAAYGLNIPPRDLAILCQKVENRIVGAPCGVMDQMT
SACGEANKLLAMICQPAEVKELVSIPTHIRFWGLDSGIRHSVGGTDYGSVRVGTYMGRKMIKCAASDLLSESLPSCPPIQSGNTNSDEYEEHGVDLLKSE
ASLEYLCNLPPHRYEAVYARDIPEIITGDAFLEKYGDHNDAVTTVDPKRSYCVKAPTRHPIYENFRVEAFKALLTAAKTVEQLSALGELMYQCHYSYNAC
GLGSDGTDRLVNMVQEVQHRKTSQDGGPSLFGAKITGGGSGGSVCVIGKNCLKSSEEIFEIQKRYKAATGYLPIVFEGSSPGAGKFGYLKIRRRST

GO Analysis
1
GO Category Biological Process
GO Term carbohydrate metabolic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term kinase activity
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Cellular comBiological Processonent
GO Term cellular_component
6
GO Category Cellular comBiological Processonent
GO Term cytosol
Presence of Splice variants No