LOC_Os02g04680

Expression Profile

RGAP LOCUS ID

LOC_Os02g04680

RAP-DB ID

Os02g0139400

Function

OsSPL3 - SBP-box gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

4.532

3) NUCPRED Prediction

localization

Non Nuclear

score

0.74

4) Y-Loc Prediction

localization

Nuclear

score

100

confidence value

0.99

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

SBP

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsSPL3

Function assigned as per literature

OsSPL3 has role in crown root development in rice

Subcellular localization as per literature

Nucleus

Cells used for localization experiment

rice root meristem cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

30940685

Reference of localization

http://www.plantcell.org/content/31/6/1257.long

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.1

NLS score

1.69

Protein Sequence

>LOC_Os02g04680.1 protein
MGSFGMDWNQKSSVLWDWENMPPIGNSANENPKNVMLAESKLAGVGVDIGHESGHSSGGTFSSSSEIGYGSSKSSISASIDSPSKVGNTIELNFASAEEH
DKNMDKGKSKVDDTGTSRSPVVAANRVEPLIGLKLGKRTYFEDVCGGQNVKSSPSGVSVATPSPGLAKKVKVAQQNTQNPHCQVEGCNVDLSSAKPYHRK
HRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQKKRSCRRRLHDHNARRRKPQPEAISLSSSRLSTLLYGDARQQASFLFGQAPYGQMGSCASSWD
NPVPGGFKFTATKAPWSRPTIAAGVDGTHVSNQQASGNVLPHGAHHSFDGLMAFKETNAKVLNQGMEASAVASGSARGPDFEHALSLLSIDSVGAANLQP
GSQIHPGVTAIAGTSNPVMMPSPAIWQGGLSLDQQAQFQAFDRLGNDDDEDHLQLPKPSYDNSHYDQMN

GO Analysis

GO Category	Biological Process
GO Term	flower development

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Biological Process
GO Term	multicellular organismal development

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants

YES