| RGAP LOCUS ID |
LOC_Os02g04520 |
| RAP-DB ID |
Os02g0137800 |
| Function |
AGG2, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
13 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
3.385 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.64 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.84 |
| confidence value |
0.92 |
| Number Of Software Predicting Nucleus |
3 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
RGG2 |
| Function assigned as per literature |
RGG2 regulates grain and organ size via the GA pathway |
| Subcellular localization as per literature |
nucleus, cytoplasm, and plasma Membrane |
| Cells used for localization experiment |
Rice protoplasts cells |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
30160362 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/pdf/10.1111/pbi.13005 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.14 |
| NLS score |
-0.22 |
| Protein Sequence |
>LOC_Os02g04520.1 protein
MRGEANGEEEQQPPRRNHLRDDAEEEEEVERRAARPVSGQQQQQQRRRPTDVGGGAAMRSVGYVGKHRLSAAIARLDQELQSLQDELNELETMEPASAAC
QGVITSTEGKSDPLLPVTIGPENASWERWFQRVRSSRSNKWWASKGSDFS |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
molecular_function |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
intracellular |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plasma membrane |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
post-embryonic development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| Presence of Splice variants |
YES |
