LOC_Os02g04330

Expression Profile

RGAP LOCUS ID LOC_Os02g04330
RAP-DB ID Os02g0135900
Function 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 10.5

2) CELLO Prediction
localization Nuclear
score 2.967

3) NUCPRED Prediction
localization Non Nuclear
score 0.52

4) Y-Loc Prediction
localization Nuclear
score 64.18
confidence value 0.18
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGBP
Function assigned as per literature OsGBP plays an important role in leaf and endosperm starch biosynthesis by mediating the binding of granule-bound starch synthase (GBSS) proteins to developing starch granules.
Subcellular localization as per literature Chloroplast
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31449354
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/jipb.12866
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.127
NLS score 0.02
Protein Sequence >LOC_Os02g04330.1 protein
MECLTTSFTRNPGREYNLICPSEALSEKQRIQRRVLCYFPASTNSRRCRKFTTMAYPVSPIAGRRSNWRSFAASLNLEDGPASSDSTSSPSEQTSDGGEV
YGDPSENLNSRKLKSDELKSLLADSERSKLLKKLSEANQYNRFLKRQLQMKDNDVVKFKSELAVMELELQALVALAEEIANFDVPSGSRKINGKYIQSHL
LTRLEAVHDKVMEQIKDVDSLKHQEISVFWVGIAENVQIMGSFDGWSQGEAMSMEYSGYQARFSATLNLRPGRYEIKFLVDGEWRLSLEYPIDGEGSMQN
NILVVN

GO Analysis
1
GO Category Molecular Function
GO Term carbohydrate binding
2
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES