LOC_Os02g03330

Expression Profile

RGAP LOCUS ID LOC_Os02g03330
RAP-DB ID Os02g0125700
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Chloroplast
score 3.316

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.39
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsLIL3
Function assigned as per literature
Subcellular localization as per literature Thylakoid membrane
Cells used for localization experiment Rice leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28607067
Reference of localization https://www.pnas.org/content/114/26/6866.long#F1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.124
NLS score -0.16
Protein Sequence >LOC_Os02g03330.1 protein
MAMATSTFSPPASQLSLTRRRLHPGPDLLTLSSPRLRAGLRLARAAAGEAPVETVEAPPSKPEAEPSPAASNGAAVKAEKPPAAAAAPPLPKFRDSRWVN
GTWDLRQFEKGGAVDWDAVIDAEARRRKWLEDCPEATSPDEAVVFDTSIIPWWAWMKRFHLPEAEKLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCK
TLLFVAVAGVLLVRKNEDIETVKKLIDETTFYDKQWQATWQDESPSQPKK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Cellular comBiological Processonent
GO Term plastid
3
GO Category Cellular comBiological Processonent
GO Term thylakoid
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No