LOC_Os02g02480

Expression Profile

RGAP LOCUS ID LOC_Os02g02480
RAP-DB ID Os02g0116600
Function basic helix-loop-helix DND-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Nuclear
score 2.609

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsbHLH59|OsbHLH059|OsPRI3
Function assigned as per literature Involvement in defence responses via a JA-mediated signaling pathway
Subcellular localization as per literature Nucleus
Cells used for localization experiment N. benthamiana leaves and rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 28270131
Reference of localization https://bmcbiotechnol.biomedcentral.com/track/pdf/10.1186/s12896-017-0344-7
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.131
NLS score -0.47
Protein Sequence >LOC_Os02g02480.3 protein
MDGGGDPVDEFLIGGGGEDGDLGVFCDGVPTLPCDGGLGIDDVSGDTCCLDQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSSVINPDKQAK
LDKANILSDAARLLAELRGEAEKLKESNEKLRETIKDLKVEKNELRDEKVTLKAEKERLEQQVKALSVAPTGFVPHLPHPAAFHPAAFPPFIPPYQALGN
KNAPTPAAFQGMAMWQWLPPTAVDTTQDPKLWPPNA

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES