LOC_Os02g02210

Expression Profile

RGAP LOCUS ID LOC_Os02g02210
RAP-DB ID Os02g0112900
Function aminotransferase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Cytoplasmic
score 2.039

3) NUCPRED Prediction
localization Non Nuclear
score 0.17

4) Y-Loc Prediction
localization Cytoplasm
score 96
confidence value 0.8
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGABA-T
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.095
NLS score 0.46
Protein Sequence >LOC_Os02g02210.1 protein
MTTPHGLLQYSSGAFSDQVPADDSAEEHGVKDHAMLAPFTAAWQTAISPPLVIERSEGCYVYDVNGTKYLDALAGLLSTALGGSEPRLVKAATEQLNKLP
FYHSFWNHTTRPSLDLAKELISMFTAREMGKVFFTNSGSEANDSQVKIVWYYNNALGRPKKKNIISRTQSYHGTTFISASLSGLPTLHQDFDLPGRFVLH
TDCPHYWRFHLPGETEEEFATRLADNLENLILKQGPETIAAFIAEPVIGAGGVILPPKTYFEKIQAVVKKYDILFIVDEVITGFGRLGTMFGSDLYNIKP
DLVSLAKALSSAYAPIGAILVSPEISDVIHSHSNKLGTFAHGFTYSGHPVSCAVALEALKIYRERDIPGHVTHVAQRFQEGIKAFAAGSPIVGETRGVGL
LIATEFTDNKSPYELFPFEWGVGEIFGQECKKRGMMVKVLGNLIAMSPPLIITREEIDKLVSIYGEALKATEERVAELKSKKN

GO Analysis
1
GO Category Biological Process
GO Term reproduction
2
GO Category Biological Process
GO Term pollen-pistil interaction
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Biological Process
GO Term pollination
5
GO Category Biological Process
GO Term cellular component organization
6
GO Category Biological Process
GO Term anatomical structure morphogenesis
7
GO Category Biological Process
GO Term cell differentiation
8
GO Category Biological Process
GO Term cell growth
9
GO Category Biological Process
GO Term biological_process
10
GO Category Molecular Function
GO Term binding
11
GO Category Cellular comBiological Processonent
GO Term mitochondrion
12
GO Category Biological Process
GO Term response to external stimulus
13
GO Category Biological Process
GO Term metabolic process
14
GO Category Biological Process
GO Term cellular process
15
GO Category Biological Process
GO Term catabolic process
16
GO Category Biological Process
GO Term response to stress
17
GO Category Cellular comBiological Processonent
GO Term membrane
18
GO Category Cellular comBiological Processonent
GO Term vacuole
19
GO Category Molecular Function
GO Term transferase activity
Presence of Splice variants No