| RGAP LOCUS ID |
LOC_Os02g01150 |
| RAP-DB ID |
Os02g0101500 |
| Function |
erythronate-4-phosphate dehydrogenase domain containing protein, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
mito |
| score |
5 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.211 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.02 |
4) Y-Loc
Prediction
|
| localization |
Cytoplasm |
| score |
94 |
| confidence value |
0.83 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsHPR1 |
| Function assigned as per literature |
OsHPR1 is involved in photorespiratory metabolism in rice |
| Subcellular localization as per literature |
Peroxisome |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
24401104 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/pdf/10.1111/jipb.12125 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.104 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os02g01150.1 protein
MAKPISIEVWNPSGKYRVVSTKSMPGTRWIRLLADNDCRLEICTETKTILSVDDILALIGDRCDGVIGQLTEEWGEVLFSALKRAGGTAFSNMAVGYNNV
DVEAANRNGIAVGNTPGVLTETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMIEGFKMNLIYYDLYQS
TRLEKFVTAYGQFLKANGEQPVTWKRAATMEDVLREADVISLHPVLDKTTYHLINPERLAIMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE
DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNLVEPFLKEDATPPAACPSIVNAKQLGRYYYVPLVNSYSLPS |
GO Analysis |
| 1 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
extracellular region |
|
| 2 |
| GO Category |
Molecular Function |
| GO Term |
RNA binding |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 5 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
peroxisome |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 8 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| Presence of Splice variants |
YES |
