LOC_Os02g01030

Expression Profile

RGAP LOCUS ID LOC_Os02g01030
RAP-DB ID Os02g0100300
Function tetratricopeptide repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 2.44

3) NUCPRED Prediction
localization Non Nuclear
score 0.49

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) HSP40
Function assigned as per literature HSP40 recruit caspase-3-like activity in cytoplasm, and formed a HSP40/Caspase3/GRP94/Gas2 complex at the interface between ER and cytoplasm under severe ER stress
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Rice mesophyll protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 27538481
Reference of localization https://www.nature.com/articles/srep31764
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 4
Basic residues % 0.125
NLS score 1.69
Protein Sequence >LOC_Os02g01030.1 protein
MDASRVGELRTFVEACKKDPSLLADPNLAFFRDYLESLGAHLPAAAFTKATPKPKQPSSMDDIDDEYDDDDDDDLNMRDATPEPDELDQDIVESDLELEG
DIVESDHQDPPQKMGDPSIDVTEENRDASQEAKSKAMEAMSEGKLEEAIDHLTKAILLNPLSAIMYGTRASVFIKMKKPVAAIRDANAALEINPDSAKGY
KTRGMAYAMLGKWEEAAHDLHTASNMDYDDEINAVLKKVEPNAHKIMEHRRKYERLRKEREEKRAERDRFHRRAEAQAAYDKAKRKEQSSSRSSGGASPR
GGFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGGVPGNVDMSKILNDPDLMAAFGDPEVMAALQDVMNNPASFARHQANPKVGPIIAK
MMAKFNGSQ

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Cellular comBiological Processonent
GO Term cytosol
3
GO Category Molecular Function
GO Term binding
Presence of Splice variants YES