LOC_Os01g74410

Expression Profile

RGAP LOCUS ID LOC_Os01g74410
RAP-DB ID Os01g0975300
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.349

3) NUCPRED Prediction
localization Non Nuclear
score 0.51

4) Y-Loc Prediction
localization Nuclear
score 98.95
confidence value 0.47
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category MYB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMYB48-1
Function assigned as per literature OsMYB48-1 plays a positive role in drought and salinity tolerance by regulating stress-induced ABA synthesis
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 24667379
Reference of localization http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0092913
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.22
Protein Sequence >LOC_Os01g74410.1 protein
MVVAGKKQGRHSFSASSSSSSSSSCSVVQLGHHQRPQGEDPLIGIKAAAAGGGGIMRKGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLR
WVNYLHPGLKRGRMSPEEERMVVQLHAKLGNRWSRIAKSIPGRTDNEIKNYWRTHLRKLKLKQQKQQQSDDHHNDNDDDDDRNSSSSSSSSNSNSNLQQQ
PQPEDESSASGSLQAQHHEDQHQLFLHPLWNDDIIVDVDCWSSSTNVVAPPPMPASPLWDIDDAFFCSDYSLPLWG

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Molecular Function
GO Term DNA binding
3
GO Category Cellular comBiological Processonent
GO Term nucleus
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES