LOC_Os01g73900
| RGAP LOCUS ID | LOC_Os01g73900 |
| RAP-DB ID | Os01g0970600 |
| Function | DEAD-box ATP-dependent RNA helicase, putative, expressed |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | chlo |
| score | 8 |
2) CELLO Prediction |
|
| localization | Mitochondrial |
| score | 2.138 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.19 |
4) Y-Loc Prediction |
|
| localization | Chloroplast |
| score | 9 |
| confidence value | 0.25 |
| Number Of Software Predicting Nucleus | 0 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OsRH58 |
| Function assigned as per literature | OsRH58 possess RNA chaperone activity confers stress tolerance by increasing translation of chloroplast mRNAs |
| Subcellular localization as per literature | Chloroplast |
| Cells used for localization experiment | tobacco leaves |
| NUCLEAR or Not Nuclear | NOT NUCLEAR |
| PMID | 30626336 |
| Reference of localization | https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-018-1623-8 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 0 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.116 |
| NLS score | -0.47 |
| Protein Sequence | >LOC_Os01g73900.1 protein MAAFSGCASPLSTTLRSGLAPFTLRHRLRLRRLRASAATLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYLLSVF SAIDFGRSSVQALVVVPTRELGMQVTKVARILAAKACTVMALLDGGMLRRQKSWVKAEPPAIIVATVASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSK QVSSLRKILTSYSAASSRQTIFASASIPQHNRFVHDCVQHKWTKTDVVHVHVNPVQPMPSHLQHKYAICSKKERLHVLLSLLEKDAPKSGIIFVAEQSEK SKKAGHPPSTTVVVEFLRTTYMGSLEVLLLEEDMNFNARATSFTEVKGKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRAGRTGREPFSKLAC SVTTLITEDEHFVLQRFQNELKFHCEELPVESMFAFNL |
GO Analysis |
|
| Presence of Splice variants | No |