LOC_Os01g72670
| RGAP LOCUS ID | LOC_Os01g72670 |
| RAP-DB ID | Os01g0956700 |
| Function | expressed protein |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | cyto |
| score | 12 |
2) CELLO Prediction |
|
| localization | Cytoplasmic |
| score | 3.42 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.18 |
4) Y-Loc Prediction |
|
| localization | Cytoplasm |
| score | 94 |
| confidence value | 0.76 |
| Number Of Software Predicting Nucleus | 0 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OsLCD |
| Function assigned as per literature | LCD is related to cadmium tolerance and accumulation in rice |
| Subcellular localization as per literature | Cytoplasm and nucleus |
| Cells used for localization experiment | Onion epidermal cells |
| NUCLEAR or Not Nuclear | NUCLEAR |
| PMID | 21908474 |
| Reference of localization | https://academic.oup.com/jxb/article/62/15/5727/563468 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 0 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.133 |
| NLS score | -0.47 |
| Protein Sequence | >LOC_Os01g72670.4 protein MVETTVDVMIRKGTNMRLESYEFLSDFKHGNAVVLLDYTESGNKGSFIVTQVDGSFTAWFETGGKELCFDSSGHITQLFKDMIVDFYDLTWSLHKRHLVM QNFVKENIYVKIFDGVPKLMILLTEVKLVDQLGPFKQDWSHVQGLMTWCKEQSGLKMDFLTKSFYDFIGSTDCTVIKLRNYPDDWDEKKKGDYLLTLAEV NHGVLKDKLKSRDDFHWPFVKLPKLEQNLPPMLQQILSGERQMKRKFDVTFFCDYINLLRNSYKKFNELPENVKALCINQDGFIKLIDGWSPEFWTKIYE KIGWPDYNIWKWPCKK |
GO Analysis |
|
| Presence of Splice variants | YES |