LOC_Os01g72220

Expression Profile

RGAP LOCUS ID LOC_Os01g72220
RAP-DB ID Os01g0951000
Function WD domain, G-beta repeat domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 3.825

3) NUCPRED Prediction
localization Non Nuclear
score 0.39

4) Y-Loc Prediction
localization Nuclear
score 70.99
confidence value 0.91
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsFY
Function assigned as per literature
Subcellular localization as per literature Nucleus
Cells used for localization experiment N. benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 19561057
Reference of localization https://academic.oup.com/pcp/article/50/8/1479/1814026
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.074
NLS score -0.47
Protein Sequence >LOC_Os01g72220.1 protein
MILQAHDQAVRSMIWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH
PTKSLLVSGGKDYLVKLWDAKSGRELRSFHGHKNIVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVSGSYDGAI
FHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRFWCRNRPGDLTRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSR
NEGTIPGIGVAMPLDGSDHGEQRPSIPGLPPGQPPLPPGPHPSLLAGGQQQQYQQMQQQHPQFPRPPPPNMPQLQPPAHMLPHAQGSRAPLPQLPSMSGP
PPVNPPLPPMPHPMAMQVQGSSNQMMPQMPQHLIGMNQTHQGPPSNMPPMGGFPNGMGNIQGGSSASGMQNFPMGGMYNRPQGKMPPQAQAQMTSIPGLS
SYQPGMGNVGLPPPPPQHPPPRGSAPQ

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term intracellular
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term flower development
5
GO Category Biological Process
GO Term reproduction
6
GO Category Biological Process
GO Term post-embryonic development
7
GO Category Biological Process
GO Term embryo development
Presence of Splice variants No