LOC_Os01g72020

Expression Profile

RGAP LOCUS ID LOC_Os01g72020
RAP-DB ID Os01g0948900
Function BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 4

2) CELLO Prediction
localization Chloroplast
score 1.273

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.16
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category TRAF

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsBOP1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.083
NLS score -0.47
Protein Sequence >LOC_Os01g72020.1 protein
MEETLKSLSMDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGAAADQAAAPPGALLLDHLSPRSPSGGASASSPRGAGGSAAAAAAAT
PGAVIPVSSVSYEVFLLLLQFLYSGQVSLVPQKGEPRPGCGERGCWHTHCAAAVDLALDTLAAARSFGVEELALLTQKQLAGMVEKASIEDVMKVLMASR
KQDLHQLWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIDELRLKSMSRRSPFLSHHHHHPHAAAAGIEASSAAELDDHHKIRRMRRALDSSDVELVKLMVM
GEGLNLDDALALHYAVENCSREVVKALLELGAADVNHPAGPAGKTPLHVAAEMVCPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLA
HIEPNKLRLCLELVQSAAMVMSREDAQTAAVNAAPIYGESPGGGGGGGVYNASGTSSSMVNLSLDNRMVYLNLGMDAQFGKMNDGGDGDDGGSRGPSSLF
SPHGFP

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term flower development
3
GO Category Cellular comBiological Processonent
GO Term cytoplasm
4
GO Category Biological Process
GO Term abscission
5
GO Category Biological Process
GO Term anatomical structure morphogenesis
6
GO Category Biological Process
GO Term multicellular organismal development
7
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants YES