LOC_Os01g69850

Expression Profile

RGAP LOCUS ID

LOC_Os01g69850

RAP-DB ID

Os01g0922800

Function

OsMADS65 - MADS-box family gene with MIKC* type-box, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

3.704

3) NUCPRED Prediction

localization

Non Nuclear

score

0.59

4) Y-Loc Prediction

localization

Nuclear

score

96.89

confidence value

0.3

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

M-type_MADS

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsMADS51|OsMADS65

Function assigned as per literature

Subcellular localization as per literature

Nucleus and cytoplasm

Cells used for localization experiment

Onion epidermal cell

NUCLEAR or Not Nuclear

NUCLEAR

PMID

25096924

Reference of localization

https://academic.oup.com/jxb/article/65/18/5339/2885031

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.151

NLS score

0.02

Protein Sequence

>LOC_Os01g69850.1 protein
MPPPPPPHSIDPLLLLPHFSPPPHHHTHARTHARLRFPPPTRGGEGGELGFFGAGMARRGRVQLRRIEDKASRQVRFSKRRAGLFKKAFELALLCDVEVA
LLVFSPVGKLYEYSSSSIEGTYDRYQQFAGARRDLNEGSTSINSDENASIHSRLRDITAWSLQNNADESDANQLEKLEKLLTNALRDTKSKKMLAKQNGE
GSRSRANSSGSRGQEEGSA

GO Analysis

GO Category	Molecular Function
GO Term	DNA binding

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Molecular Function
GO Term	protein binding

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants