LOC_Os01g68860

Expression Profile

RGAP LOCUS ID

LOC_Os01g68860

RAP-DB ID

Os01g0917400

Function

zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

2) CELLO Prediction

localization

Nuclear

score

3.694

3) NUCPRED Prediction

localization

Non Nuclear

score

0.39

4) Y-Loc Prediction

localization

Chloroplast

score

confidence value

0.09

Number Of Software Predicting Nucleus

Seed Specific

Transcription factor category

C3H

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

C3H12

Function assigned as per literature

C3H12, as a nucleic acid-binding protein, positively and quantitatively regulates rice resistance to Xoo and that its function is likely associated with the JA-dependent pathway

Subcellular localization as per literature

Nucleus (using two different types of putative NLSs, a bipartite signal at the N terminus, and an SV40-type NLS at the C terminus )

Cells used for localization experiment

onion epidermal cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

22158700

Reference of localization

http://www.plantphysiol.org/content/158/2/876.long

Is Subcellular localization evidence by author available ?

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.089

NLS score

-0.47

Protein Sequence

>LOC_Os01g68860.1 protein
MDDAGRASAPAVVTVTASAAAPTPPLPPPPPPPPPSQLPATAAATDEPSHDPAALYGEGMWQQMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMS
CRFNHPQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELF
NAMASSRGSPIYPSVHSSATAGPPYTGTMASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGAQQTYGTSQQVDA
SAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCK
FDHPTMAPPMGVYAYGSASTNVPMVRRLLQSPSASAYTS

GO Analysis

GO Category	Molecular Function
GO Term	binding

GO Category	Biological Process
GO Term	biological_process

GO Category	Molecular Function
GO Term	nucleic acid binding

Presence of Splice variants

YES