LOC_Os01g68370

Expression Profile

RGAP LOCUS ID LOC_Os01g68370
RAP-DB ID Os01g0911700
Function B3 DNA binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.058

3) NUCPRED Prediction
localization Nuclear
score 0.85

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.99
Number Of Software Predicting Nucleus 4
Seed Specific Yes
Transcription factor category ABI3VP1/B3

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OSVP1|VP1
Function assigned as per literature A seed-specific transcriptional regulator
Subcellular localization as per literature Nuclear
Cells used for localization experiment Subcellular fractionation experiments from the rice cell suspension culture cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 8673344
Reference of localization https://academic.oup.com/pcp/article/37/3/355/1931061
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score 0.34
Protein Sequence >LOC_Os01g68370.1 protein
MDASAGSSAPHSHGNPGKQGGGGGGGGGRGKAPAAEIRGEAARDDVFFADDTFPLLPDFPCLSSPSSSTFSSSSSSNSSSAFTTAAGGGCGGEPSEPASA
ADGFGELADIDQLLDLASLSVPWEAEQPLFPDDVGMMIEDAMSGQPHQADDCTGDGDTKAVMEAAGGGDDAGDACMEGSDAPDDLPAFFMEWLTSNREYI
SADDLRSIRLRRSTIEAAAARLGGGRQGTMQLLKLILTWVQNHHLQKKRPRTAIDDGAASSDPQLPSPGANPGYEFPSGGQEMGSAAATSWMPYQAFTPP
AAYGGDAMYPGAAGPFPFQQSCSKSSVVVSSQPFSPPTAAAAGDMHASGGGNMAWPQQFAPFPVSSTSSYTMPSVVPPPFTAGFPGQYSGGHAMCSPRLA
GVEPSSTKEARKKRMARQRRLSCLQQQRSQQLNLSQIHISGHPQEPSPRAAHSAPVTPSSAGCRSWGIWPPAAQIIQNPLSNKPNPPPATSKQPKPSPEK
PKPKPQAAATAGAESLQRSTASEKRQAKTDKNLRFLLQKVLKQSDVGSLGRIVLPKEAEVHLPELKTRDGVSIPMEDIGTSQVWNMRYRFWPNNKSRMYL
LENTGDFVRSNELQEGDFIVIYSDIKSGKYLIRGVKVRRAAQEQGNSSGAVGKHKHGSPEKPGVSSNTKAAGAEDGTGGDDSAEAAAAAAAGKADGGGCK
GKSPHGVRRSRQEAAAAASMSQMAVSI

GO Analysis
1
GO Category Biological Process
GO Term cellular component organization
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Cellular comBiological Processonent
GO Term nucleus
6
GO Category Biological Process
GO Term biosynthetic process
7
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
8
GO Category Biological Process
GO Term signal transduction
9
GO Category Molecular Function
GO Term protein binding
10
GO Category Cellular comBiological Processonent
GO Term cytosol
11
GO Category Biological Process
GO Term embryo development
12
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES