LOC_Os01g67290

Expression Profile

RGAP LOCUS ID LOC_Os01g67290
RAP-DB ID Os01g0898300
Function cyclin-related protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 3.345

3) NUCPRED Prediction
localization Nuclear
score 0.83

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.34
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Osspr1
Function assigned as per literature OsSPR1 is involved in root development and iron homeostasis
Subcellular localization as per literature Mitochondria (first 107 and 150 amino acids of OsSPR1 were used in the study)
Cells used for localization experiment Onion epidermal cells and Arabidopsis cell suspensions
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 21039568
Reference of localization https://nph.onlinelibrary.wiley.com/doi/epdf/10.1111/j.1469-8137.2010.03513.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 3
Number of Bipartite 1
Basic residues % 0.111
NLS score 1.14
Protein Sequence >LOC_Os01g67290.1 protein
MGVMSRRVLPACSSLCYFCPSLRARSRQPVKRYKKIIAEIYQLPPDGEPNDRRIGKLCDYVSRNPTRIPKITEYLEERCYKDLRHENFTLAKVVPCIYRK
LLCSCKDHTPLLATSTLSIIRTLLDQRMNDDLRVLGCLMLVDFLNGQVDSTHMFNLEGLIPKLCQISQELREDDKGFRLRCAALQALASMVQYMGDHSHI
SMELDEVVSVIVSCYEVNQTLSIKEVVRLQDDDDLVINGSLTGLPVSGQNSAKVASDTMSASENPAHWARVCLRNMASIAKEATTVWRVLDPLFRLFDSH
NYWSPENGIAFSILQEMQALMDKSGQNGHLLLSFTIKHIDHKSVAKKPAKQTSILKVASLLAKHAKLKASVTIASATSDLIKHLRKCMHCAVESPNAQND
VDKWNSALYVALEECLVQLTEKVGDVGPVLDMVGVMLENLSCTATIARTTISSVFRTVQIAASIHKSLYNQKAFPEALFHQLLLAMMHPDKKTRVGSHRV
LSTIIAPSLLCPWSGISFPIPVKGNDSQSITLLALSAFSSEAVMDEVRIKSRTHEQLQNNVKPETVVGSENGYTHTEPNSRKSPGLGIPLKDENLKFMKL
NSSQLVLLLSSIWSQAPLEDNSPANFEAMCHTYNIALLCSMTKSSSHAALVRCFQLAFSLRRMSLNQENGLQPSRRRCLYTMASAMLIFSAKVADIPQTI
PLVKAAVPEKMVDPHLCLIDDCRLVISSPQSSNSGIVYGSEEDESDARNFLSCVNKNDTQLKEIVISHFKEKFENLSEKFNGIEEQLLQEFSLDDSFPLS
APLFMETPHSCSMYAEKDDHCFDEEVIPCEMDDDDDIVFEHSGSQSDRKTSGSMASSDVLNVNQLIESVHETARQVANAPVSANLVPYDQMKSQCEALVM
EKQQKMSVLLSFKHSRTDSRGSTAENGLETNESSARSEPETQSTRKERMRRSDSASSESDRSFRLPPASPYDKFMRAAGR

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Molecular Function
GO Term binding
3
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants YES