LOC_Os01g66590

Expression Profile

RGAP LOCUS ID LOC_Os01g66590
RAP-DB ID Os01g0889400
Function DUF260 domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 12

2) CELLO Prediction
localization Nuclear
score 2.453

3) NUCPRED Prediction
localization Non Nuclear
score 0.25

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.1
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category LBD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIG1
Function assigned as per literature OsIG1 plays an essential role in the regulation of empty-glume identity, floral organ number control and female gametophyte development in rice
Subcellular localization as per literature Nucleus
Cells used for localization experiment Arabidopsis mesophyll protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 25324400
Reference of localization https://academic.oup.com/jxb/article/66/1/99/2893393
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.071
NLS score -0.47
Protein Sequence >LOC_Os01g66590.2 protein
MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAY
EADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQ
EQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Cellular comBiological Processonent
GO Term nucleoplasm
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Molecular Function
GO Term protein binding
5
GO Category Biological Process
GO Term flower development
Presence of Splice variants YES