LOC_Os01g66290

Expression Profile

RGAP LOCUS ID

LOC_Os01g66290

RAP-DB ID

Os01g0886200

Function

OsMADS21 - MADS-box family gene with MIKCc type-box, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction

localization

Nuclear

score

12.5

2) CELLO Prediction

localization

Nuclear

score

3.656

3) NUCPRED Prediction

localization

Non Nuclear

score

0.6

4) Y-Loc Prediction

localization

Nuclear

score

99.99

confidence value

0.94

Number Of Software Predicting Nucleus

Seed Specific

Yes

Transcription factor category

Experimental evidence for subcellular localization

Published gene name (updated 1 January 2020)

OsMADS21

Function assigned as per literature

Subcellular localization as per literature

Nuclear and cytoplasm

Cells used for localization experiment

Tobacco leaf epidermal cells

NUCLEAR or Not Nuclear

NUCLEAR

PMID

Reference of localization

RSNP-DB

Is Subcellular localization evidence by author available ?

Yes

Image

Sequence Analysis

Number of PAT4

Number of PAT7

Number of Bipartite

Basic residues %

0.136

NLS score

0.02

Protein Sequence

>LOC_Os01g66290.1 protein
MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMR
HQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQAAEDDEMAPAPAVGG
GSSSGTELEALPATFDTREYYQPAPPVSMLAAAAAAAAAQYSSDHHQTALHLGYFKVDSGKGGLL

GO Analysis

GO Category	Biological Process
GO Term	flower development

GO Category	Cellular comBiological Processonent
GO Term	nucleus

GO Category	Molecular Function
GO Term	protein binding

GO Category	Biological Process
GO Term	biosynthetic process

GO Category	Biological Process
GO Term	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

GO Category	Molecular Function
GO Term	sequence-specific DNA binding transcription factor activity

Presence of Splice variants