LOC_Os01g66120

Expression Profile

RGAP LOCUS ID LOC_Os01g66120
RAP-DB ID Os01g0884300
Function No apical meristem protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Nuclear
score 1.017

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Cytoplasm
score 91
confidence value 0.53
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category NAC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNAC6|SNAC2
Function assigned as per literature OsNAC6 functions as a transcriptional activator in response to abiotic and biotic stresses in plants
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 17587305
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/j.1365-313X.2007.03168.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.122
NLS score -0.04
Protein Sequence >LOC_Os01g66120.1 protein
MSGGQDLQLPPGFRFHPTDEELVMHYLCRRCAGLPIAVPIIAEIDLYKFDPWQLPRMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVG
SPKPVAIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSARKKNSLRLDDWVLCRIYNKKGGLEKPPAAAVAAAGMVSSGGGVQRKPMVGVNAAVSSPPE
QKPVVAGPAFPDLAAYYDRPSDSMPRLHADSSCSEQVLSPEFACEVQSQPKISEWERTFATVGPINPAASILDPAGSGGLGGLGGGGSDPLLQDILMYWG
KPF

GO Analysis
1
GO Category Biological Process
GO Term response to stress
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term multicellular organismal development
5
GO Category Biological Process
GO Term response to endogenous stimulus
6
GO Category Biological Process
GO Term signal transduction
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES