LOC_Os01g65410

Expression Profile

RGAP LOCUS ID LOC_Os01g65410
RAP-DB ID Os01g0874900
Function serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8

2) CELLO Prediction
localization Nuclear
score 1.582

3) NUCPRED Prediction
localization Non Nuclear
score 0.36

4) Y-Loc Prediction
localization Cytoplasm
score 68
confidence value 0.78
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCADT1
Function assigned as per literature OsCADT1 acts as a negative regulator of sulphate/selenate uptake and assimilation
Subcellular localization as per literature Nucleus
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 31879959
Reference of localization https://nph.onlinelibrary.wiley.com/doi/abs/10.1111/nph.16404
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 1
Basic residues % 0.113
NLS score 0.69
Protein Sequence >LOC_Os01g65410.1 protein
MDLSRPESSDLSLGFHSLGHARGHAVTGPLRLFDDMEDAKPEKSVGGGGGGGGGGGEEEDGEEGGDQHFSLLGHALCVKRPRRALYGGGGGGGAGGGGGG
GGEASSCSSSSSSLHPAKRQATAERGADLEARRGAVRAWGNQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARY
YGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTSANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYI
DYDKLEERAMDFHPKILICGGSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGS
FSQADENDYDFEDRINFAVFPSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNHLVLWDLRNLGLTGKNFEKVC
EACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDDFEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQVENFASQFAMPGFDV

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Biological Process
GO Term biological_process
3
GO Category Biological Process
GO Term metabolic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Molecular Function
GO Term catalytic activity
6
GO Category Molecular Function
GO Term binding
Presence of Splice variants No