LOC_Os01g63510

Expression Profile

RGAP LOCUS ID LOC_Os01g63510
RAP-DB ID Os01g0854500
Function homeobox domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 2.391

3) NUCPRED Prediction
localization Non Nuclear
score 0.49

4) Y-Loc Prediction
localization Nuclear
score 99.73
confidence value 0.77
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category HB/WOX

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) QHB
Function assigned as per literature QHB is involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM).
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 12904206
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1046/j.1365-313X.2003.01816.x
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.16
NLS score 0.34
Protein Sequence >LOC_Os01g63510.1 protein
MEALSGRVGVKCGRWNPTAEQVKVLTELFRAGLRTPSTEQIQRISTHLSAFGKVESKNVFYWFQNHKARERHHHKKRRRGASSPDSGSNDDDGRAAAHEG
DADLVLQPPESKREARSYGHHHRLMTCYVRDVVETEAMWERPTREVETLELFPLKSYDLEVDKVRYVRGGGGEQCREISFFDVAAGRDPPLELRLCSFGL

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No