LOC_Os01g62990

Expression Profile

RGAP LOCUS ID LOC_Os01g62990
RAP-DB ID Os01g0849100
Function ATROPGEF7/ROPGEF7, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 8.5

2) CELLO Prediction
localization Nuclear
score 1.901

3) NUCPRED Prediction
localization Non Nuclear
score 0.7

4) Y-Loc Prediction
localization Nuclear
score 84.62
confidence value 0.62
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRacGEF1
Function assigned as per literature OsCEBiP, OsCERK1, OsRacGEF1, and OsRac1 function as key components of a "defensome" critically engaged earlyduring chitin-induced immunity
Subcellular localization as per literature OsRacGEF1 was colocalized with OsRac1 in nucleus
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 23601108
Reference of localization https://www.cell.com/cell-host-microbe/pdf/S1931-3128(13)00117-0.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.126
NLS score 0.13
Protein Sequence >LOC_Os01g62990.1 protein
MGSGEEEREARSEAAFTDSADGSSSSSDAASADEWPVTLAAPPRKTAACGRVPGAEVVDSSKPHAQKRRAPSSEMEMMKERFAKLLLGEDMSGSGKGVCT
ALAIANAITNLCATIFGQLWRLEPLPPEKKAMWRREMGWLLCVSDHIVELVPTWQSFPDGTRLEVMTSRPRSDLYINLPALRKLDHMLIEILDSFRDPEF
WYVEQGICAPDCDGSASFRAAFHRRDEKWWLPVPRVPPGGLRDKARKQLQHKRDCANQILKAALAINSNALAEMEVPESYLESLPKNGRATLGDIIYRYI
TSDHFSPECLLDCLDLSTEYQALEIANRVEASVYVWRRRIAAKPASVLGRATSGRSSWGMVKDMIIDTEKRELLAERAEGLLICLKQRFPGLTQTSLDMS
KIQYNRDVGKSILESYSRVLESLASNIVARIDDLLNIDELNRHAEHFPQGDADCRIACNKAAVPPYQVPASGTPFVTAYATPSFSPAQLASPSKKERSPL
GAGRRSYSNRGFGAKKALAIDLVNPEVMGVIISGGKMIDVSTTTEL

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term biological_process
4
GO Category Molecular Function
GO Term enzyme regulator activity
Presence of Splice variants No