LOC_Os01g62420

Expression Profile

RGAP LOCUS ID LOC_Os01g62420
RAP-DB ID Os01g0841600
Function triosephosphate isomerase, cytosolic, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization Cytoplasmic
score 2.599

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Cytoplasm
score 97
confidence value 0.68
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OscTPI
Function assigned as per literature OscTP1 is MG and stress inducible and increase in MG leads to increase in TPI which results in decrease of DHAP and then decrease in the level of toxic MG
Subcellular localization as per literature cytosol
Cells used for localization experiment tobacco mesophyll protoplast
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22902706
Reference of localization https://www.tandfonline.com/doi/full/10.4161/psb.21415
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.102
NLS score -0.47
Protein Sequence >LOC_Os01g62420.1 protein
MAARKFFVGGNWKCNGTGEDVKKIVTVLNEAEVPSEDVVEVVVSPPFVFLPQVKGLLRPDFSVAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSER
RALMGESSDFVADKIAYALSQGIKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISDWTNVVLAYEPVWAIGTGKVATPAQAQEVHDGLRKWLVTNVSP
AVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKPEFVDIIKSATVKSSA

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term extracellular region
2
GO Category Biological Process
GO Term carbohydrate metabolic process
3
GO Category Biological Process
GO Term generation of precursor metabolites and energy
4
GO Category Biological Process
GO Term catabolic process
5
GO Category Molecular Function
GO Term binding
6
GO Category Cellular comBiological Processonent
GO Term cytosol
7
GO Category Biological Process
GO Term response to stress
8
GO Category Biological Process
GO Term response to abiotic stimulus
9
GO Category Cellular comBiological Processonent
GO Term mitochondrion
10
GO Category Cellular comBiological Processonent
GO Term plasma membrane
11
GO Category Cellular comBiological Processonent
GO Term plastid
12
GO Category Cellular comBiological Processonent
GO Term cellular_component
13
GO Category Biological Process
GO Term metabolic process
14
GO Category Molecular Function
GO Term catalytic activity
15
GO Category Biological Process
GO Term biological_process
16
GO Category Biological Process
GO Term cellular process
17
GO Category Cellular comBiological Processonent
GO Term vacuole
18
GO Category Biological Process
GO Term protein modification process
19
GO Category Cellular comBiological Processonent
GO Term membrane
20
GO Category Cellular comBiological Processonent
GO Term cell wall
Presence of Splice variants YES