LOC_Os01g62070

Expression Profile

RGAP LOCUS ID LOC_Os01g62070
RAP-DB ID Os01g0837800
Function cation efflux family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 6

2) CELLO Prediction
localization PlasmaMembrane
score 2.53

3) NUCPRED Prediction
localization Non Nuclear
score 0.09

4) Y-Loc Prediction
localization Cytoplasm
score 93
confidence value 0.82
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMTP11
Function assigned as per literature OsMTP11 contributes to Mn tolerance
Subcellular localization as per literature Golgi body
Cells used for localization experiment rice protoplasts and tobacco epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 29127328
Reference of localization https://www.nature.com/articles/s41598-017-15324-6
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.082
NLS score -0.13
Protein Sequence >LOC_Os01g62070.1 protein
MAAAVAGGGEEGEELLLLSAVEAGSFGGGGDGGGAGAAAEKSWRLNFDGFRPPEVQQERRPPRGLHHHCLGVLSQGPEDVVAEYYQQQVEMLEGFNEMDT
LTDRGFLPGMSKEEREKVARSETLAIRLSNIANMVLFAAKVYASVRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYRYPIGKKRMQPLGILVFA
SVMATLGLQIILESVRSLLSDGDEFSLTKEQEKWVVDIMLAVTLVKLALVLYCRTFTNEIVKAYAQDHFFDVITNMIGLVAALLATYIEGWIDPVGAIIL
AIYTIRTWSMTVLENVHSLVGQSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSHYFVEVDIVLPSSMPLQEAHDIGEALQEKLERLPEIERAFVHLD
YEFTHRPEHALSHEK

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term transporter activity
5
GO Category Cellular comBiological Processonent
GO Term endosome
6
GO Category Biological Process
GO Term biological_process
7
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
8
GO Category Biological Process
GO Term cellular homeostasis
Presence of Splice variants YES