LOC_Os01g61900

Expression Profile

RGAP LOCUS ID LOC_Os01g61900
RAP-DB ID Os01g0835700
Function CCT motif family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 11

2) CELLO Prediction
localization Nuclear
score 4.057

3) NUCPRED Prediction
localization Non Nuclear
score 0.5

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.66
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category Orphans

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCCT01
Function assigned as per literature OsCCT01 delayed flowering through suppressing the expression of Ehd1, Hd3a and RFT1 under both long day and short day conditions
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 25563494
Reference of localization https://www.nature.com/articles/srep07663
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.096
NLS score -0.47
Protein Sequence >LOC_Os01g61900.1 protein
MFRHSSSASSAASYGSDVSFMNHSPAAALPAVPTQIPRVAGGYLDGNVSGGLPHFGGAVSSSSSSPPSYSSSLPSSYYNNIQRSISSHSLPHHLQLTDHF
GGAFFSSSSSSSHQLPLPPPLSSSPSSSSGDLFEFTSPCPVRRVFSTGDLQGMNGSSPPRPLPSGESCGQDGSGPFSQKVGRYSAEERKERIERYRVKRH
QRNFNKKITYACRKTLADSRPRVKGRFARNGEADAEGDEREAFDASYSYDYSAAGYSDYRSGSNSSSVNSCYNYNRKDGAATEASVVGGSDNGEWWWRAP
GATTAEAERQRQAGFDVDEEIWATLGDMLSVNLAS

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No