LOC_Os01g60860

Expression Profile

RGAP LOCUS ID LOC_Os01g60860
RAP-DB ID Os01g0823900
Function spotted leaf 11, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Chloroplast
score 2.124

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.08
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsPUB3
Function assigned as per literature OsPUB3 is a positive regulators of the response to cold stress.
Subcellular localization as per literature exocyst positive organelle (EXPO)-like punctate structures
Cells used for localization experiment tobacco (Nicotiana benthamiana) leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28163713
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.00016/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.116
NLS score -0.47
Protein Sequence >LOC_Os01g60860.1 protein
MAGNPAAAAPSSSGSSSVFLPPPSPSDGELLRPLHRLARDLSAVDTPAPFLRAAFASISRRSKLLAAAFDDLLLCGAAGELPRSASLCLREVLLVLQRFK
AIVADCSARSRMRLLLESDEMEAELRELNHDLATLLDLLPVVELGLADDVLDVLALASRQCRRCSPAPESEEALKASVLSLIQEIEREIVPERERLEEIL
VEVGINDPASCSEEIESLEQEIGDRASEKWTASMIALVGLLRYAKCVLFSATPRPSDSNSKADVEAEDGEPPVPPSDFRCPISLDLMRDPVVVASGQTYD
RESIDRWFSSGKSTCPKTGQVLANLELVSNKALKNLISKWCRENGVAMEACEASKSEQAQAVAANKAALEAARMTASFLVKKLSVSFSPDAANRVVHEIR
LLSKSGSENRAFVGEAGAVPLLVPLLYSEDAGLQLNAVTALLNLSILEANKKRIMHADGAVEAVAHIMSSGATWRAKENAAAAVLSLASVHSYRRRLGRN
QSVVEKLVHLVRTGPTSTKKDALAALLTLAGERENVGKLVDAGVAEVALSAISKEETAAAVLAALAKRGGAEAIVNIDGAVARLVAEMRRGTDWARENAT
AALVLLCRRLGAPAVTQVMAVPGVEWAIWELMSIGTERARRKAASLGRICRRWAAASAADGERGGGCPVATVVPPAMMAS

GO Analysis
1
GO Category Biological Process
GO Term biological_process
2
GO Category Cellular comBiological Processonent
GO Term intracellular
3
GO Category Biological Process
GO Term protein modification process
4
GO Category Molecular Function
GO Term binding
5
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants No